PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG302300.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 779aa    MW: 83815.1 Da    PI: 6.4153
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG302300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-2099155157
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          +++ +++t++q+++Le++F++ ++p++++r++L+k+lgL+ rqVk+WFqNrR+++k+
  Pavir.7KG302300.2.p  99 KKRYHRHTPHQIQQLEAMFKEWPHPDEKQRADLSKRLGLEPRQVKFWFQNRRTQMKN 155
                          678899************************************************995 PP

2START154.31e-483085202205
                          HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SE CS
                START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetlak 78 
                          la +a++elvk+a+ +ep+W  s+        e +n +e+ ++f +  +     + +ea+r+sg+v  ++a lve ++d           
  Pavir.7KG302300.2.p 308 LAMRAMDELVKMAQMNEPLWIPSVsspgsstmETLNWKEYSKTFLPCVGvkpigFVSEASRESGIVNIDSAALVEFFMDEV--------- 388
                          6789****************9999887777776777777777776644499***********************9999999......... PP

                          EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                           +t+e is g      gal lm+aelq+lsplvp R+++f+R++ ql +g+w++vdvS+d  +  +    +v +++lpSg+++++++ng 
  Pavir.7KG302300.2.p 389 -STIEEISAGvagsrdGALLLMQAELQVLSPLVPrREVTFLRFCNQLAEGVWAVVDVSIDGLERDQCLVTSVNCRRLPSGCVVRETPNG- 476
                          .666666666666666********************************************9888877999*******************. PP

                          EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                          +kvtwveh+++ ++++h+l+++l++sgla ga +w+atlqrqce
  Pavir.7KG302300.2.p 477 CKVTWVEHTEYHEASVHQLYKPLLRSGLALGAGRWLATLQRQCE 520
                          *******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-2183156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-2386150IPR009057Homeodomain-like
PROSITE profilePS5007117.97796156IPR001356Homeobox domain
SMARTSM003897.8E-1997160IPR001356Homeobox domain
CDDcd000869.51E-2098157No hitNo description
PfamPF000464.1E-1899154IPR001356Homeobox domain
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PROSITE profilePS5084834.209298524IPR002913START domain
SuperFamilySSF559611.89E-28301521No hitNo description
CDDcd088758.31E-94302520No hitNo description
SMARTSM002343.0E-34307521IPR002913START domain
PfamPF018529.4E-42308520IPR002913START domain
SuperFamilySSF559619.77E-19542749No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MSFGDLLGGV GDAAAVPYPP YGAFASSPAL SLAVADAGRR RDGSGERAGS VPRGGGGGNA  60
KDAPEAEDDT RSSPMSGHLD VVLAGGGEDG EGGNPRKRKK RYHRHTPHQI QQLEAMFKEW  120
PHPDEKQRAD LSKRLGLEPR QVKFWFQNRR TQMKNQMERH ENTLLKQEND KLRAENLSIR  180
VAMRDAACSG CGGPALLGEM SLEEHHLRLE NARLRDELTR VCALTAKFIG KPLSPMALPP  240
VQQPHPMPGS SLDLAVTCVG SVPPSTMPVS TISELAGSVS SQMGTVITPV VTTPLAMGSG  300
DKSMFVQLAM RAMDELVKMA QMNEPLWIPS VSSPGSSTME TLNWKEYSKT FLPCVGVKPI  360
GFVSEASRES GIVNIDSAAL VEFFMDEVST IEEISAGVAG SRDGALLLMQ AELQVLSPLV  420
PRREVTFLRF CNQLAEGVWA VVDVSIDGLE RDQCLVTSVN CRRLPSGCVV RETPNGCKVT  480
WVEHTEYHEA SVHQLYKPLL RSGLALGAGR WLATLQRQCE GLAILVSSVA VPEHDSSAVP  540
LEGKRSLLKL AERMMENFCA GVSASSAEWS KLDVLTGSMR KDVRVMVRKS VDEPGVPPGV  600
VLSAATAVWM PVTPERLFNF LRNEELRAEW DILSNGGPMQ QMLRIAKGQL DGNSVTLLRA  660
DPTNTHLNSI FILQETCTDK SGAMVVYAPV DFPAMQLVMG GGDSTYVALL PSGFAILPGG  720
SSAGGVGHKT SGSLLTVAFQ ILVNSQPTAK LTLESVDTVY SLISCTIEKI KASLHCEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100PRKRKKR
29599RKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.258791e-104callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978185.10.0PREDICTED: homeobox-leucine zipper protein ROC4
SwissprotQ7Y0V90.0ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBLK3Y5A80.0K3Y5A8_SETIT; Uncharacterized protein
STRINGSi009396m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1